ETaxonomy - Recent changes [en]

2012May16

2012-05-16T17:45:41Z

Reports:

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	** worked with David and integrated the FP messaging system with the annotation processor		** worked with David and integrated the FP messaging system with the annotation processor
	** working with Maureen to integrate the driver with annotation processor.		** working with Maureen to integrate the driver with annotation processor.
		+	==Notes==
		+	Filtered Push Team Meeting 2012 May 16
		+
		+	Present: Bertram; James; Heather, Bob, Maureen, Paul, Jim, David.
		+
		+	Agenda
		+	* Annual Report, due end of July
		+	Need to check the "due" vs "overdue" dates (for proposal with Hong) (July 1?)
		+	Jim: Currently in "Overdue" state (which begins 90 days before the funding year ends). Last year's report in GoogleDocs doc. Just need to add new text under 2011-12 headings work done since last report. Have time to work on it next week.
		+	Consensus: Work on next week and then submit.
		+	* Collaborations
		+	** Wisconsin/KU
		+	Jim: Summary of call this morning. Considering supplements.
		+	Discussion.
		+	** Kepler
		+	Bertram: Letter draft for iDigBio circulating. Need to start into actual proposal writing. Budget, probably needs first cut at what the work items would be.
		+	James: Did people get email suggesting things we could do?
		+	Jim: Responded with some edits, Bertram also responded.
		+	Bob: Also responded with an interpretation of what the flagged sentence might mean, James and Bertram will need to review (already OK-ed in the email)
		+	James: About sustainablity.
		+	Bob: Clearest about training, particularly train the trainer. Nicest story perhaps if we who have stuff that people need training work with them on developing such courses.
		+	Jim: Pushing the development deadline for the proposal, adds complexity and time to expand.
		+	James: Most within current team, adding iDigBio strengthens missing pieces of story.
		+	Jim: Would be good to have draft sketch of budget as soon as possible.
		+	James: Don't know that we know what we need.
		+	Jim: Having to provide numbers will force the issue.
		+	TODO: Target by next wednesday for draft overview of budget, main line items.
		+	TODO: James to send letter to iDigBio.
		+	Proposal development conference call next Tuesday May 22, 11:15 Eastern. Bertram to send out call arragnements.
		+	** SCAN
		+	No current developments.
		+
		+	* SPNHC demo deployment
		+	** Current deployment on firuta
		+	Pieces for end users running on Firuta are Morphbank, Symbiota, and Annotation Processor. Imported set of data: Test data in Symbiota from Harvard botanical collections, plus a record from the MCZ, plus a data set from Florida State. Test data in Morphank are morphanks own test records plus a selected A and MCZ specimen.
		+
		+	Walked through annotation processor and Symbiota.
		+
		+	** Plan for feedback from Jim and James
		+
		+	David, Lei, Maureen, Paul to draft up script and questions, then circulate to Jim and James for feedback.
		+
		+	Jim: Is there a plan for a dress rehearsal before the demonstration?
		+
		+	Paul: Yes.
		+
		+	* For Later
		+	** CNH TCN Collaboration

2012May16

2012-05-16T16:04:54Z

Reports:

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	** Implemented a generic SPARQL query message (for FPMessage with scheme=sparql) for running SPARQL queries on annotations in the annotation store.		** Implemented a generic SPARQL query message (for FPMessage with scheme=sparql) for running SPARQL queries on annotations in the annotation store.
	** Created 4 annotations (2 from morphbank and 2 from symbiota) on our test data and submitted them into the network node on firuta for use by the annotation processor.		** Created 4 annotations (2 from morphbank and 2 from symbiota) on our test data and submitted them into the network node on firuta for use by the annotation processor.
		+	* Lei
		+	** worked with David and integrated the FP messaging system with the annotation processor
		+	** working with Maureen to integrate the driver with annotation processor.

2012May16

2012-05-16T16:00:55Z

Reports:

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	** Trouble-shooting Tomcat out-of-memory errors		** Trouble-shooting Tomcat out-of-memory errors
	** Worked with Lei on interface between annotation processor and driver		** Worked with Lei on interface between annotation processor and driver
		+	* David
		+	** Finished fp access point deployment script for firuta and Hudson deployment of the client helper web service as a war file to tomcat.
		+	** Helped Bob with refactoring SparqlPush php code.
		+	** Completed implementaion of query message containing kvp (annotatesResoure=annotationuri) in ApplePieSPARQLQueryJob. Can now obtain response annotation history.
		+	** Implemented an annotation store (using SDB as a triple store over mysql) for storing incoming annotations. Added this functionality to the ApplePieAnnotationJob.
		+	** Implemented a generic SPARQL query message (for FPMessage with scheme=sparql) for running SPARQL queries on annotations in the annotation store.
		+	** Created 4 annotations (2 from morphbank and 2 from symbiota) on our test data and submitted them into the network node on firuta for use by the annotation processor.

2012May16

2012-05-16T15:43:59Z

Reports:

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	==Reports==		==Reports==
		+	* Maureen
		+	** Created OAuth provider interface for Specify driver and deployed the servlet on firuta.
		+	** Trouble-shooting Tomcat out-of-memory errors
		+	** Worked with Lei on interface between annotation processor and driver

Roadmap

2012-05-16T15:41:54Z

Current Status:

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	***can communicate with the messaging system of the FPush network to get interested annotation and send out response annotation		***can communicate with the messaging system of the FPush network to get interested annotation and send out response annotation
	*** working on web interface for the SPNHC demo.		*** working on web interface for the SPNHC demo.
-	*** '''Drivers:''' Specify6 Driver. Can retrieve data ~~from Specify~~.	+	*** '''Drivers:''' Specify6 Driver. OAuth provider servlet verifies Specify user credentials over http. Can retrieve data.
	** '''Client Helper:''' Can generate annotation RDF for new/updated annotations from a Specify Database. Can generate four types of apple pie annotations (cluster duplicates, new determination, update determination, response annotation). The client helper can now also be configured to support any rdf/xml document generated from java classes. Also exposed as a web service for use by clients (Symbiota, Morphbank) See: [[DeterminationToRDF Tool]] and [[Rdf_Handler]]		** '''Client Helper:''' Can generate annotation RDF for new/updated annotations from a Specify Database. Can generate four types of apple pie annotations (cluster duplicates, new determination, update determination, response annotation). The client helper can now also be configured to support any rdf/xml document generated from java classes. Also exposed as a web service for use by clients (Symbiota, Morphbank) See: [[DeterminationToRDF Tool]] and [[Rdf_Handler]]
	** '''MorphBank:''' Can make local installation of Morphbank. See: [[Installing_Morphbank]]. Morphbank can now inject an annotation into the network (using the client helper webservice) by creating a new annotation on an image or by editing an existing determination.		** '''MorphBank:''' Can make local installation of Morphbank. See: [[Installing_Morphbank]]. Morphbank can now inject an annotation into the network (using the client helper webservice) by creating a new annotation on an image or by editing an existing determination.

2012May16

2012-05-16T15:05:25Z

Created page with "Category:FilteredPush Category:FP Meetings Etherpad for meeting notes: http://firuta.huh.harvard.edu:9000/FP-2012May16 ==Agenda== * Collaborations ** Wisconsin/KU ** Ke..."

New page

[[Category:FilteredPush]]
[[Category:FP Meetings]]

Etherpad for meeting notes: http://firuta.huh.harvard.edu:9000/FP-2012May16

==Agenda==
* Collaborations
** Wisconsin/KU
** Kepler
** SCAN
* SPNHC demo deployment
** Current deployment on firuta
** Plan for feedback from Jim and James
* For Later
** Annual Report, due end of July
** CNH TCN Collaboration

==Reports==

Project Management

2012-05-16T15:02:44Z

Meetings:

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	== Meetings ==		== Meetings ==
		+
		+	[[2012May16]] Wednesday
		+
	[[2012May02]] Wednesday		[[2012May02]] Wednesday

Roadmap

2012-05-14T15:44:39Z

Current Status:

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	** '''Network Transport Layer = Overlay Network:''' Nothing yet.		** '''Network Transport Layer = Overlay Network:''' Nothing yet.
	** Network Capabilities		** Network Capabilities
-	*** '''Annotation Store:''' Redstore installation See: [[RedStore_Installation_on_firuta]]. Not yet connected to Triage implementations.	+	*** '''Annotation Store:''' Redstore installation See: [[RedStore_Installation_on_firuta]]. Not yet connected to Triage implementations. Currently using Jena triplestore apis (SDB) over MySQL to store incoming annotations as triples. Used by the access point via the AnnotationJob.
	*** '''Harvesting and network data cache'''		*** '''Harvesting and network data cache'''
	**** '''Data Providers:''' Some work on Specify6 OAI-PMH service.		**** '''Data Providers:''' Some work on Specify6 OAI-PMH service.